TnSeqCorr

Top 10 genes with highest correlation to Rv1788/PE18:

update plotcorrelationlink to info on gene
Rv0491/regX3 (cc=0.4642) info on Rv0491/regX3
Rv1143/mcr (cc=0.4274) info on Rv1143/mcr
Rv1793/esxN (cc=0.4126) info on Rv1793/esxN
Rv1725c/- (cc=0.3988) info on Rv1725c/-
Rv3061c/fadE22 (cc=0.3938) info on Rv3061c/fadE22
Rv0083/- (cc=0.3891) info on Rv0083/-
Rv0232/- (cc=0.3867) info on Rv0232/-
Rv2851c/- (cc=0.3748) info on Rv2851c/-
Rv0438c/moeA2 (cc=0.373) info on Rv0438c/moeA2
Rv1790/PPE27 (cc=0.3681) info on Rv1790/PPE27

Correlation of Rv1788/PE18 with Rv2851c/-

Normalized LFCs for Rv1788/PE18:
(description and provenance of datasets)
Rv1788/PE18Rv2851c/-
Fe_supp_jason_reseq

-1.127

-0.021

low_pH_jason_reseq

0.348

-0.852

NO_jason_reseq

2.292

2.539

B6_jason_reseq

-1.043

0.843

MHCII_jason_reseq

-0.869

1.51

Isoniazid02

-0.058

0.781

Rifampicin4

-0.19

-0.319

Ethambutol3

-0.143

0.14

Meropenem3

-0.043

0.478

Vancomycin16

-0.783

-0.653

Rv2680_day32

-0.039

1.779

H37Rv_KO_MarP

0.127

0.562

hypoxia_3wks

0.068

0.809

hypoxia_6wks

0.161

0.472

glycerol

-0.129

0.884

cholesterol

-0.56

-1.323

AJ

-0.997

-0.484

Bibs02

0.543

0.0

Bibs02c

0.276

-0.217

BL6

0.062

0.463

BL6a

0.525

0.08

BXD01

-0.261

0.373

BXD010

-0.405

0.052

BXD011

0.597

0.149

BXD03

-0.071

-0.99

BXD04

-0.129

0.744

BXD05

0.105

0.514

BXD06

-0.155

-0.091

BXD07

0.218

-0.131

BXD08

-0.211

0.589

BXD09

-0.286

1.403

CAST

-0.455

-1.333

CCcont

0.217

0.612

DS01

0.072

-0.517

DS02

0.158

1.549

DS04

0.128

-0.632

DS0c

-0.311

0.635

GP01

0.227

2.288

GP02

0.761

0.201

GP0c

0.704

1.225

NOD

-0.67

-0.835

NZO

-0.159

0.533

PWK

0.352

-0.776

H37Rv_KO_CtpC

0.173

0.248

H37Rv_KO_CtpD

-1.465

0.484

H37Rv_KO_Rv1272

-0.239

0.609

H37Rv_KO_SugABC

-0.435

2.202

H37Rv_KO_MbtN

-0.221

1.314

Trans05

-0.966

1.236

macrophage_unactivated

0.379

0.956

IL1

0.688

1.777

Rapamycin

1.105

2.55

Tcell

0.743

1.033

GMCSF

0.826

1.067

IFNab

0.333

0.051

IFNg

1.502

3.814

IFNg_GMCSF1

1.427

4.286

Rv1432_day32

0.765

1.601

Rv1565c_day32

-0.325

-0.31

secA2_input

0.246

-0.56

delta_Rv3594

0.047

0.716

delta_Rv3717

-0.07

0.405

delta_Rv3811

-0.41

0.882

delta_Rv0954

-0.231

0.031

PonA1

0.56

-1.27

EccD1_KO

1.023

0.789

EspI_KO

0.2

0.819

PE35_KO

0.0

0.289

PPE68_KO

-0.25

0.451

glycerol2

1.09

3.544

lignocerate

0.832

3.187

oleate

1.381

-1.418

phosphatidylcholine

1.249

3.27

acetate

0.472

2.809

glucAc

0.313

2.649

Rv0950ko

-0.847

0.585

Rv1096ko

0.287

0.558

Rv3684ko

0.632

1.041

delta_otsA_trehalose

-1.6

2.311