Top 10 genes with highest correlation to Rv1682/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0079/- | (cc=0.5049) | info on Rv0079/- |
| Rv1403c/- | (cc=0.5046) | info on Rv1403c/- |
| Rv1838c/vapC13 | (cc=0.4904) | info on Rv1838c/vapC13 |
| Rv1765c/- | (cc=0.4901) | info on Rv1765c/- |
| Rv1160/mutT2 | (cc=0.4817) | info on Rv1160/mutT2 |
| Rv2015c/- | (cc=0.4554) | info on Rv2015c/- |
| Rv2681/- | (cc=0.452) | info on Rv2681/- |
| Rv1527c/pks5 | (cc=0.4512) | info on Rv1527c/pks5 |
| Rv3353c/- | (cc=0.4508) | info on Rv3353c/- |
| Rv3295/- | (cc=0.4478) | info on Rv3295/- |
Correlation of Rv1682/- with Rv0079/-
Normalized LFCs for Rv1682/-:
(description and provenance of datasets)
| Rv1682/- | Rv0079/- | |
| Fe_supp_jason_reseq | 0.873 | 0.786 |
| low_pH_jason_reseq | -0.44 | -0.656 |
| NO_jason_reseq | -1.536 | -3.499 |
| B6_jason_reseq | -0.496 | -0.146 |
| MHCII_jason_reseq | -0.098 | -0.022 |
| Isoniazid02 | 0.356 | -0.172 |
| Rifampicin4 | 0.403 | 0.295 |
| Ethambutol3 | -0.336 | -0.063 |
| Meropenem3 | 0.261 | 0.273 |
| Vancomycin16 | 0.042 | 0.289 |
| Rv2680_day32 | -2.292 | -1.975 |
| H37Rv_KO_MarP | 0.056 | 0.454 |
| hypoxia_3wks | -1.128 | -1.667 |
| hypoxia_6wks | 0.729 | 0.155 |
| glycerol | -1.265 | 0.554 |
| cholesterol | -0.829 | 0.54 |
| AJ | 1.03 | -0.837 |
| Bibs02 | 1.074 | -0.076 |
| Bibs02c | 0.165 | 0.265 |
| BL6 | -1.013 | -1.84 |
| BL6a | -1.099 | -1.356 |
| BXD01 | -1.114 | -1.657 |
| BXD010 | -0.562 | -1.017 |
| BXD011 | -0.483 | -2.414 |
| BXD03 | 0.206 | -0.69 |
| BXD04 | -0.708 | -1.119 |
| BXD05 | -0.273 | -1.056 |
| BXD06 | -0.717 | -1.678 |
| BXD07 | 0.109 | -0.972 |
| BXD08 | -1.487 | -1.957 |
| BXD09 | -1.17 | -1.809 |
| CAST | 0.047 | 0.245 |
| CCcont | -0.341 | -0.948 |
| DS01 | 0.655 | -0.763 |
| DS02 | 0.636 | -0.651 |
| DS04 | 0.312 | -0.534 |
| DS0c | -0.413 | -0.636 |
| GP01 | 0.745 | -0.476 |
| GP02 | -0.379 | -1.224 |
| GP0c | -0.699 | -0.846 |
| NOD | -0.023 | 0.988 |
| NZO | 1.23 | -0.597 |
| PWK | 0.62 | -0.165 |
| H37Rv_KO_CtpC | 0.785 | -1.004 |
| H37Rv_KO_CtpD | -0.289 | -0.481 |
| H37Rv_KO_Rv1272 | -0.322 | -0.406 |
| H37Rv_KO_SugABC | 0.406 | -0.436 |
| H37Rv_KO_MbtN | -1.319 | -0.723 |
| Trans05 | -0.68 | -1.393 |
| macrophage_unactivated | -1.575 | -2.326 |
| IL1 | -0.896 | -1.326 |
| Rapamycin | -1.712 | -1.43 |
| Tcell | -0.821 | -2.998 |
| GMCSF | -1.024 | -2.36 |
| IFNab | -1.811 | -1.862 |
| IFNg | 0.211 | -4.022 |
| IFNg_GMCSF1 | -0.842 | -3.098 |
| Rv1432_day32 | -0.866 | -0.272 |
| Rv1565c_day32 | 0.164 | 0.986 |
| secA2_input | -0.607 | 0.0 |
| delta_Rv3594 | 0.153 | 0.815 |
| delta_Rv3717 | -0.162 | -0.327 |
| delta_Rv3811 | 0.061 | 0.433 |
| delta_Rv0954 | 0.0 | 1.545 |
| PonA1 | 1.377 | 0.795 |
| EccD1_KO | -0.112 | -0.148 |
| EspI_KO | -0.779 | -0.148 |
| PE35_KO | 0.712 | -1.009 |
| PPE68_KO | 0.051 | -0.598 |
| glycerol2 | -0.263 | 0.427 |
| lignocerate | 0.794 | 0.111 |
| oleate | -1.547 | -0.403 |
| phosphatidylcholine | 0.662 | 0.232 |
| acetate | 0.715 | 0.223 |
| glucAc | 0.786 | 0.99 |
| Rv0950ko | -0.347 | 0.703 |
| Rv1096ko | -0.127 | 1.188 |
| Rv3684ko | 0.0 | 0.364 |
| delta_otsA_trehalose | 0.213 | 0.386 |