Top 10 genes with highest correlation to Rv1140/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0038/- | (cc=0.6106) | info on Rv0038/- |
| Rv0406c/- | (cc=0.6091) | info on Rv0406c/- |
| Rv0840c/pip | (cc=0.5912) | info on Rv0840c/pip |
| Rv1323/fadA4 | (cc=0.5822) | info on Rv1323/fadA4 |
| Rv2784c/lppU | (cc=0.5818) | info on Rv2784c/lppU |
| Rv3482c/- | (cc=0.5785) | info on Rv3482c/- |
| Rv0561c/- | (cc=0.5715) | info on Rv0561c/- |
| Rv2076c/- | (cc=0.5702) | info on Rv2076c/- |
| Rv0614/- | (cc=0.5628) | info on Rv0614/- |
| Rv0910/- | (cc=0.5543) | info on Rv0910/- |
Correlation of Rv1140/- with Rv0038/-
Normalized LFCs for Rv1140/-:
(description and provenance of datasets)
| Rv1140/- | Rv0038/- | |
| Fe_supp_jason_reseq | 0.59 | 0.639 |
| low_pH_jason_reseq | 0.626 | -2.28 |
| NO_jason_reseq | -0.142 | -1.809 |
| B6_jason_reseq | -0.403 | -0.172 |
| MHCII_jason_reseq | 2.535 | 0.482 |
| Isoniazid02 | 1.574 | 1.078 |
| Rifampicin4 | 0.872 | -0.125 |
| Ethambutol3 | 1.031 | 1.394 |
| Meropenem3 | 0.682 | 0.518 |
| Vancomycin16 | 1.005 | 0.0 |
| Rv2680_day32 | 1.175 | 0.349 |
| H37Rv_KO_MarP | 0.066 | -0.707 |
| hypoxia_3wks | -0.654 | -0.67 |
| hypoxia_6wks | -1.27 | -0.883 |
| glycerol | 0.709 | 0.914 |
| cholesterol | 1.2 | 1.171 |
| AJ | 0.124 | -0.745 |
| Bibs02 | 0.494 | 0.525 |
| Bibs02c | 2.387 | 1.638 |
| BL6 | -1.006 | -1.116 |
| BL6a | 0.696 | 0.914 |
| BXD01 | -0.168 | -0.304 |
| BXD010 | -0.708 | -0.165 |
| BXD011 | -1.367 | -0.985 |
| BXD03 | -1.944 | -1.083 |
| BXD04 | -0.413 | -1.363 |
| BXD05 | -1.02 | -0.28 |
| BXD06 | -0.895 | -0.323 |
| BXD07 | -1.113 | -0.975 |
| BXD08 | -1.102 | -0.835 |
| BXD09 | -0.534 | -0.558 |
| CAST | -1.45 | -2.129 |
| CCcont | 0.0 | 1.46 |
| DS01 | 2.236 | 1.406 |
| DS02 | 1.128 | -0.232 |
| DS04 | 0.912 | 0.887 |
| DS0c | 2.325 | 1.397 |
| GP01 | -0.748 | -0.027 |
| GP02 | -1.063 | -0.783 |
| GP0c | 0.317 | 0.109 |
| NOD | 0.024 | -1.302 |
| NZO | -1.178 | -0.198 |
| PWK | -1.12 | -1.689 |
| H37Rv_KO_CtpC | -1.159 | -1.101 |
| H37Rv_KO_CtpD | 0.12 | -0.052 |
| H37Rv_KO_Rv1272 | -0.916 | 0.323 |
| H37Rv_KO_SugABC | -0.393 | -0.282 |
| H37Rv_KO_MbtN | 0.108 | 0.28 |
| Trans05 | -1.403 | -1.208 |
| macrophage_unactivated | 0.843 | -0.287 |
| IL1 | -1.391 | -1.456 |
| Rapamycin | -0.166 | -1.212 |
| Tcell | -0.857 | -1.763 |
| GMCSF | -0.449 | -1.397 |
| IFNab | -0.605 | -0.695 |
| IFNg | -0.144 | -1.962 |
| IFNg_GMCSF1 | 0.163 | -1.543 |
| Rv1432_day32 | -0.276 | -0.143 |
| Rv1565c_day32 | 1.728 | -0.603 |
| secA2_input | -0.086 | -0.085 |
| delta_Rv3594 | 1.446 | 1.597 |
| delta_Rv3717 | 0.225 | 1.212 |
| delta_Rv3811 | 0.717 | 1.057 |
| delta_Rv0954 | 0.292 | 2.218 |
| PonA1 | 1.402 | 1.599 |
| EccD1_KO | 1.46 | 0.0 |
| EspI_KO | 0.262 | 0.405 |
| PE35_KO | 1.543 | 0.922 |
| PPE68_KO | 1.309 | 0.378 |
| glycerol2 | 0.553 | 0.544 |
| lignocerate | 0.373 | -0.587 |
| oleate | 0.218 | -1.113 |
| phosphatidylcholine | 0.766 | -0.353 |
| acetate | 0.442 | 0.657 |
| glucAc | 0.395 | 0.653 |
| Rv0950ko | 0.706 | 0.88 |
| Rv1096ko | -0.452 | 0.199 |
| Rv3684ko | -0.436 | -0.2 |
| delta_otsA_trehalose | -2.085 | 0.056 |