Top 10 genes with highest correlation to Rv0955/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3208/- | (cc=0.6447) | info on Rv3208/- |
| Rv3258c/- | (cc=0.6074) | info on Rv3258c/- |
| Rv1080c/greA | (cc=0.6021) | info on Rv1080c/greA |
| Rv1836c/- | (cc=0.5922) | info on Rv1836c/- |
| Rv0016c/pbpA | (cc=0.5902) | info on Rv0016c/pbpA |
| Rv2553c/- | (cc=0.5664) | info on Rv2553c/- |
| Rv3854c/ethA | (cc=0.5591) | info on Rv3854c/ethA |
| Rv2922c/smc | (cc=0.546) | info on Rv2922c/smc |
| Rv1420/uvrC | (cc=0.5443) | info on Rv1420/uvrC |
| Rv0637/hadC | (cc=0.5434) | info on Rv0637/hadC |
Correlation of Rv0955/- with Rv3208/-
Normalized LFCs for Rv0955/-:
(description and provenance of datasets)
| Rv0955/- | Rv3208/- | |
| Fe_supp_jason_reseq | 1.837 | 4.191 |
| low_pH_jason_reseq | -1.021 | 0.0 |
| NO_jason_reseq | -0.717 | 0.0 |
| B6_jason_reseq | -1.704 | 0.0 |
| MHCII_jason_reseq | -1.244 | 0.0 |
| Isoniazid02 | -0.323 | 0.0 |
| Rifampicin4 | -1.313 | 0.0 |
| Ethambutol3 | 0.34 | 0.0 |
| Meropenem3 | -0.417 | 0.0 |
| Vancomycin16 | -1.287 | 0.0 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -3.71 | -1.705 |
| hypoxia_3wks | -0.734 | -0.55 |
| hypoxia_6wks | -0.384 | -0.288 |
| glycerol | -0.919 | 0.0 |
| cholesterol | 0.0 | 0.0 |
| AJ | -0.845 | 0.0 |
| Bibs02 | -0.115 | 0.0 |
| Bibs02c | 0.753 | 0.0 |
| BL6 | -0.254 | 0.768 |
| BL6a | 0.118 | 0.0 |
| BXD01 | -0.475 | 0.0 |
| BXD010 | 0.569 | 0.352 |
| BXD011 | -0.579 | 0.35 |
| BXD03 | -0.177 | 0.0 |
| BXD04 | -0.251 | 0.0 |
| BXD05 | 0.08 | 0.135 |
| BXD06 | -0.084 | 0.0 |
| BXD07 | 0.499 | 0.0 |
| BXD08 | -0.084 | 0.0 |
| BXD09 | 0.0 | 0.0 |
| CAST | 1.023 | 0.0 |
| CCcont | 2.378 | 1.43 |
| DS01 | 0.274 | 0.0 |
| DS02 | -0.61 | 0.0 |
| DS04 | 0.781 | 0.682 |
| DS0c | -0.137 | 0.0 |
| GP01 | -0.548 | 0.0 |
| GP02 | -0.462 | 0.0 |
| GP0c | 0.0 | 0.357 |
| NOD | -0.142 | 0.0 |
| NZO | -0.126 | 0.0 |
| PWK | -0.257 | 0.0 |
| H37Rv_KO_CtpC | 2.378 | 0.0 |
| H37Rv_KO_CtpD | 0.28 | 0.0 |
| H37Rv_KO_Rv1272 | -0.395 | 0.141 |
| H37Rv_KO_SugABC | -0.062 | 0.348 |
| H37Rv_KO_MbtN | 1.0 | 0.196 |
| Trans05 | -0.366 | 0.131 |
| macrophage_unactivated | -0.17 | 0.398 |
| IL1 | -1.077 | 0.374 |
| Rapamycin | -0.166 | 1.068 |
| Tcell | 0.336 | 0.0 |
| GMCSF | 0.272 | 0.333 |
| IFNab | 0.157 | 0.729 |
| IFNg | -0.617 | 0.93 |
| IFNg_GMCSF1 | 0.625 | 0.396 |
| Rv1432_day32 | 0.621 | 0.0 |
| Rv1565c_day32 | -0.766 | 0.0 |
| secA2_input | -0.225 | -1.368 |
| delta_Rv3594 | 1.52 | 1.487 |
| delta_Rv3717 | 1.888 | 1.223 |
| delta_Rv3811 | 0.973 | -0.171 |
| delta_Rv0954 | -3.467 | -0.149 |
| PonA1 | -2.282 | -0.204 |
| EccD1_KO | -1.194 | -1.204 |
| EspI_KO | -0.676 | 0.0 |
| PE35_KO | -2.71 | -2.981 |
| PPE68_KO | -2.236 | -2.742 |
| glycerol2 | -1.625 | -0.82 |
| lignocerate | -2.025 | -0.712 |
| oleate | -1.472 | -0.829 |
| phosphatidylcholine | -1.947 | -0.819 |
| acetate | -2.151 | -0.973 |
| glucAc | -2.324 | -0.605 |
| Rv0950ko | -0.416 | 0.311 |
| Rv1096ko | -1.707 | -0.513 |
| Rv3684ko | 0.789 | 0.17 |
| delta_otsA_trehalose | 0.202 | 0.0 |