Top 10 genes with highest correlation to Rv0839/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3055/- | (cc=0.4854) | info on Rv3055/- |
| Rv0575c/- | (cc=0.4812) | info on Rv0575c/- |
| Rv2977c/thiL | (cc=0.4811) | info on Rv2977c/thiL |
| Rv3639c/- | (cc=0.4798) | info on Rv3639c/- |
| Rv1493/mutB | (cc=0.4371) | info on Rv1493/mutB |
| Rv1123c/bpoB | (cc=0.4344) | info on Rv1123c/bpoB |
| Rv1706c/PPE23 | (cc=0.4285) | info on Rv1706c/PPE23 |
| Rv3197/- | (cc=0.4223) | info on Rv3197/- |
| Rv0247c/- | (cc=0.4197) | info on Rv0247c/- |
| Rv2980/- | (cc=0.4178) | info on Rv2980/- |
Correlation of Rv0839/- with Rv3055/-
Normalized LFCs for Rv0839/-:
(description and provenance of datasets)
| Rv0839/- | Rv3055/- | |
| Fe_supp_jason_reseq | 0.63 | -0.038 |
| low_pH_jason_reseq | -0.865 | -1.819 |
| NO_jason_reseq | 0.845 | -1.748 |
| B6_jason_reseq | -0.214 | -0.069 |
| MHCII_jason_reseq | -0.189 | -0.203 |
| Isoniazid02 | 0.914 | 0.0 |
| Rifampicin4 | 0.046 | 0.306 |
| Ethambutol3 | 0.328 | 0.95 |
| Meropenem3 | 0.131 | 1.065 |
| Vancomycin16 | 0.093 | 0.554 |
| Rv2680_day32 | 0.356 | 0.761 |
| H37Rv_KO_MarP | 0.402 | 0.354 |
| hypoxia_3wks | -0.259 | -0.347 |
| hypoxia_6wks | 0.476 | -1.042 |
| glycerol | -0.048 | -0.515 |
| cholesterol | -0.519 | -1.488 |
| AJ | -0.069 | 0.042 |
| Bibs02 | -0.429 | -0.523 |
| Bibs02c | 0.286 | -0.703 |
| BL6 | 0.215 | -0.993 |
| BL6a | 0.23 | -0.894 |
| BXD01 | -0.07 | -0.426 |
| BXD010 | 0.347 | -1.402 |
| BXD011 | 0.194 | -0.563 |
| BXD03 | 0.348 | -0.923 |
| BXD04 | 0.029 | 0.632 |
| BXD05 | -0.376 | -0.967 |
| BXD06 | -0.165 | -1.168 |
| BXD07 | 0.197 | -0.913 |
| BXD08 | 0.55 | -1.242 |
| BXD09 | -0.27 | -1.333 |
| CAST | -0.04 | 0.123 |
| CCcont | 0.378 | -0.225 |
| DS01 | 0.082 | -0.958 |
| DS02 | -0.928 | -1.966 |
| DS04 | -0.177 | 0.298 |
| DS0c | 0.489 | 0.013 |
| GP01 | 0.868 | 0.765 |
| GP02 | 0.341 | 2.108 |
| GP0c | 0.365 | 1.447 |
| NOD | 0.858 | -0.718 |
| NZO | -0.071 | -0.571 |
| PWK | 0.347 | -0.692 |
| H37Rv_KO_CtpC | 0.295 | -1.75 |
| H37Rv_KO_CtpD | 1.904 | -0.895 |
| H37Rv_KO_Rv1272 | -0.438 | -1.317 |
| H37Rv_KO_SugABC | 0.362 | -0.799 |
| H37Rv_KO_MbtN | 0.119 | -0.993 |
| Trans05 | -0.288 | -1.181 |
| macrophage_unactivated | 0.309 | 0.593 |
| IL1 | 0.311 | -0.528 |
| Rapamycin | 1.022 | 0.052 |
| Tcell | 0.176 | -0.58 |
| GMCSF | 0.182 | 0.613 |
| IFNab | 0.363 | -1.088 |
| IFNg | 0.102 | -2.248 |
| IFNg_GMCSF1 | 0.509 | 0.817 |
| Rv1432_day32 | -0.532 | -1.304 |
| Rv1565c_day32 | 0.69 | 0.147 |
| secA2_input | 0.759 | 1.935 |
| delta_Rv3594 | 0.083 | -1.837 |
| delta_Rv3717 | -0.477 | -1.419 |
| delta_Rv3811 | 0.259 | -1.404 |
| delta_Rv0954 | 0.116 | -1.24 |
| PonA1 | -0.01 | -0.39 |
| EccD1_KO | 0.776 | 2.911 |
| EspI_KO | 0.776 | 1.517 |
| PE35_KO | 1.068 | 2.214 |
| PPE68_KO | 1.552 | 3.443 |
| glycerol2 | 0.581 | 1.407 |
| lignocerate | 0.667 | 0.838 |
| oleate | 0.208 | 0.502 |
| phosphatidylcholine | 0.447 | 1.241 |
| acetate | -0.091 | 0.083 |
| glucAc | 0.216 | 0.164 |
| Rv0950ko | 0.317 | -0.727 |
| Rv1096ko | 0.501 | 1.716 |
| Rv3684ko | 0.642 | 0.252 |
| delta_otsA_trehalose | -0.636 | -0.491 |