TnSeqCorr

Top 10 genes with highest correlation to Rv0281/-:

update plotcorrelationlink to info on gene
Rv3390/lpqD (cc=0.5099) info on Rv3390/lpqD
Rv1442/bisC (cc=0.5028) info on Rv1442/bisC
Rv3532/PPE61 (cc=0.4856) info on Rv3532/PPE61
Rv0654/- (cc=0.4727) info on Rv0654/-
Rv3064c/- (cc=0.4621) info on Rv3064c/-
Rv1882c/- (cc=0.4599) info on Rv1882c/-
Rv2473/- (cc=0.4552) info on Rv2473/-
Rv0317c/glpQ2 (cc=0.4425) info on Rv0317c/glpQ2
Rv0255c/cobQ1 (cc=0.441) info on Rv0255c/cobQ1
Rv2351c/plcA (cc=0.4358) info on Rv2351c/plcA

Correlation of Rv0281/- with Rv0317c/glpQ2

Normalized LFCs for Rv0281/-:
(description and provenance of datasets)
Rv0281/-Rv0317c/glpQ2
Fe_supp_jason_reseq

-0.451

-0.726

low_pH_jason_reseq

-1.598

-1.099

NO_jason_reseq

0.249

-0.822

B6_jason_reseq

-0.917

-0.272

MHCII_jason_reseq

-0.72

0.263

Isoniazid02

0.163

0.221

Rifampicin4

-0.525

0.766

Ethambutol3

0.59

0.055

Meropenem3

0.501

0.604

Vancomycin16

-0.157

0.178

Rv2680_day32

0.399

0.034

H37Rv_KO_MarP

0.349

0.724

hypoxia_3wks

-0.06

0.841

hypoxia_6wks

-0.161

0.117

glycerol

-0.019

0.334

cholesterol

-0.593

0.59

AJ

-0.057

-0.541

Bibs02

0.596

0.466

Bibs02c

0.881

-0.218

BL6

-0.994

-0.521

BL6a

-0.059

-0.197

BXD01

-0.496

-0.581

BXD010

-1.004

-0.572

BXD011

-0.433

-0.353

BXD03

0.213

-0.35

BXD04

-0.067

-0.61

BXD05

-0.08

-0.186

BXD06

-0.843

-0.415

BXD07

-0.557

-0.2

BXD08

0.025

0.077

BXD09

-0.606

-0.437

CAST

0.0

-0.439

CCcont

-0.439

-0.749

DS01

-0.253

-0.38

DS02

-0.221

0.206

DS04

0.645

0.271

DS0c

0.052

0.377

GP01

-0.455

1.097

GP02

0.222

2.108

GP0c

-0.333

0.48

NOD

-0.705

0.519

NZO

-0.831

-0.465

PWK

-0.328

-0.787

H37Rv_KO_CtpC

0.092

0.47

H37Rv_KO_CtpD

-0.584

0.226

H37Rv_KO_Rv1272

-0.618

-0.269

H37Rv_KO_SugABC

0.796

-0.39

H37Rv_KO_MbtN

0.272

0.744

Trans05

0.012

0.275

macrophage_unactivated

0.202

0.199

IL1

-0.344

0.857

Rapamycin

-0.028

0.77

Tcell

0.0

0.29

GMCSF

0.462

-0.198

IFNab

-0.172

0.054

IFNg

-0.024

-0.2

IFNg_GMCSF1

-0.211

-0.267

Rv1432_day32

-0.317

-0.345

Rv1565c_day32

0.55

-0.313

secA2_input

-0.407

0.1

delta_Rv3594

-0.716

0.116

delta_Rv3717

-0.624

0.021

delta_Rv3811

-0.409

0.064

delta_Rv0954

-0.41

0.221

PonA1

-0.337

0.284

EccD1_KO

-0.569

-0.862

EspI_KO

-1.494

-0.804

PE35_KO

-1.167

-0.983

PPE68_KO

-1.094

-1.552

glycerol2

0.646

0.129

lignocerate

0.549

0.023

oleate

0.846

-0.027

phosphatidylcholine

0.843

0.19

acetate

0.037

0.168

glucAc

-0.125

0.02

Rv0950ko

-0.492

0.766

Rv1096ko

-0.763

0.072

Rv3684ko

-1.009

-0.026

delta_otsA_trehalose

1.655

2.255