MtbTnDB - interactive tool for exploring a database of published TnSeq datasets for Mtb
TnSeqCorr - genes with correlated TnSeq profiles across >100 conditions *new*
| Classification | Condition | Strain | Method | Reference | Notes |
|---|---|---|---|---|---|
| Uncertain | Sodium Oleate | H37RvMA | Gumbel | Subhalaxmi Nambi | Probability of Essentiality: 0.616800; 3 non-insertions in a row out of 3 sites |
| Non-Essential | Lignoceric Acid | H37RvMA | Gumbel | Subhalaxmi Nambi | Probability of Essentiality: 0.000000; 2 non-insertions in a row out of 3 sites |
| Uncertain | Phosphatidylcholine | H37RvMA | Gumbel | Subhalaxmi Nambi | Probability of Essentiality: 0.713600; 3 non-insertions in a row out of 3 sites |
| Uncertain | minimal media + 0.1% glycerol | H37RvMA | Gumbel | Griffin et al. (2011) | Probability of Essentiality: 0.686400; 3 non-insertions in a row out of 3 sites |
| Non-Essential | minimal media + 0.01% cholesterol | H37RvMA | Gumbel | Griffin et al. (2011) | Probability of Essentiality: 0.000000; 2 non-insertions in a row out of 3 sites |
| No-Data | 7H10-glycerol | H37RvMA | TraSH | Sassetti et al. (2003a) | |
| Too-Short | C57BL/6J mice (8 weeks) | H37RvMA | TraSH | Sassetti et al. (2003b) | Hybridization Ratio: -1 |
| Uncertain | 7H09/7H10 + rich media | H37RvMA | MotifHMM | DeJesus et al. (2017) | Fully saturated (14 reps). |