TB Genome Annotation Portal

Rv1082 (mca)

Amino Acid Sequence

VSELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRIAEIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLP
DDCFARVPLEVSTEALVRVVREFRPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGDFCRFPDAGEPWTVSKLYYVHGFLRERMQMLQDEFARHGQRGP
FEQWLAYWDPDHDFLTSRVTTRVECSKYFSQRDDALRAHATQIDPNAEFFAAPLAWQERLWPTEEFELARSRIPARPPETELFAGIEP
(Nucleotide sequence available on KEGG)

Additional Information




Analysis of Positive Selection in Clinical Isolates *new*

Moldova (2,057)global set (5,195)
under significant positive selection?NONO
omega peak height (95%CI lower bound)1.47 (0.18)0.97 (0.33)
codons under selection
omega plots
genetic variants*linklink
statistics at each codonlinklink
* example format for variants: "D27 (GAC): D27H (CAC,11)" means "Asp27 (native codon GAC) mutated to His (codon CAC) in 11 isolates"


ESSENTIALITY

MtbTnDB - interactive tool for exploring a database of published TnSeq datasets for Mtb

TnSeqCorr - genes with correlated TnSeq profiles across ~100 conditions

Rv1082/mca, gene len: 866 bp, num TA sites: 13
conditiondatasetcallmediummethodnotes
in-vitroDeJesus 2017 mBionon-essential7H9HMMfully saturated, 14 TnSeq libraries combined
in-vitroSassetti 2003 Mol Micronon-essential 7H9TRASHessential if hybridization ratio<0.2
in-vivo (mice)Sassetti 2003 PNASnon-essential BL6 miceTRASHessential if hybridization ratio<0.4, min over 4 timepoints (1-8 weeks)
in-vitro (glycerol)Griffin 2011 PPathnon-essentialM9 minimal+glycerolGumbel2 replicates; Padj<0.05
in-vitro (cholesterol)Griffin 2011 PPathnon-essentialM9 minimal+cholesterolGumbel3 replicates; Padj<0.05
differentially essential in cholesterol Griffin 2011 PPathNO (LFC=-0.66)cholesterol vs glycerolresampling-SRYES if Padj<0.05, else not significant; LFC<0 means less insertions/more essential in cholesterol
in-vitroSmith 2022 eLifenon-essential7H9HMM6 replicates (raw data in Subramaniam 2017, PMID 31752678)
in-vivo (mice)Smith 2022 eLifenon-essentialBL6 miceHMM6 replicates (raw data in Subramaniam 2017, PMID 31752678)
differentially essential in miceSmith 2022 eLifeNO (LFC=-0.21)in-vivo vs in-vitroZINBYES if Padj<0.05, else not significant; LFC<0 means less insertions/more essential in mice
in-vitro (minimal)Minato 2019 mSysnon-essentialminimal mediumHMM
in-vitro (YM rich medium)Minato 2019 mSysnon-essentialYM rich mediumHMM7H9 supplemented with ~20 metabolites (amino acids, cofactors)
differentially essential in YM rich mediumMinato 2019 mSysNO (LFC=-0.94)YM rich vs minimal mediumresampling

TnSeq Data No data currently available.
  • No TnSeq data currently available for this Target.
RNASeq Data No data currently available.
  • No RNA-Seq data currently available for this Target.
Metabolomic Profiles No data currently available.
  • No Metabolomic data currently available for this Target.
Proteomic Data No data currently available.
  • No Proteomic data currently available for this Target.

Regulatory Relationships from Systems Biology
  • BioCyc

    Gene interactions based on ChIPSeq and Transcription Factor Over-Expression (TFOE) (Systems Biology)

    NOTE: Green edges represent the connected genes being classified as differentially essential as a result of the middle gene being knocked out. These interactions are inferred based on RNASeq.

    Interactions based on ChIPSeq data

    RNA processing and modification
    Energy production and conversion
    Chromatin structure and dynamics
    Amino acid transport and metabolism
    Cell cycle control, cell division, chromosome partitioning
    Carbohydrate transport and metabolism
    Nucleotide transport and metabolism
    Lipid transport and metabolism
    Coenzyme transport and metabolism
    Transcription
    Translation, ribosomal structure and biogenesis
    Cell wall/membrane/envelope biogenesis
    Replication, recombination and repair
    Posttranslational modification, protein turnover, chaperones
    Cell motility
    Secondary metabolites biosynthesis, transport and catabolism
    Inorganic ion transport and metabolism
    Function unknown
    General function prediction only
    Intracellular trafficking, secretion, and vesicular transport
    Signal transduction mechanisms
    Extracellular structures
    Defense mechanisms
    Nuclear structure
    Cytoskeleton
  • BioCyc Co-regulated genes based on gene expression profiling (Systems Biology, Inferelator Network)
  • Differentially expressed as result of RNASeq in glycerol environment (Only top 20 genes shown sorted by log fold change with p_adj 0.05).
    Conditionally essential as result of TNSeq (Only top 20 genes shown sorted by log fold change with p_adj 0.05).
  • BioCyc Transcription factor binding based on ChIP-Seq (Systems Biology)
  • Interactions based on ChIPSeq data (Minch et al. 2014)

    Interactions based on TFOE data (Rustad et al. 2014)



    TBCAP

    Tubculosis Community Annotation Project (
    Slayden et al., 2013)

    Rv1082 (mca)

    PropertyValueCreatorEvidencePMIDComment
    CitationMycothiol biochemistry. GL. Newton & RC. Fahey Arch. Microbiol. 2002njamshidiISS12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    TermTBRXN:MSHAMID conjugated glutathione amidase (Mtb) - ISSnjamshidiISS12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    GL. Newton & RC. Fahey Mycothiol biochemistry. Arch. Microbiol. 2002
    CitationA novel mycothiol-dependent detoxification pathway in mycobacteria involving mycothiol S-conjugate amidase. GL. Newton, Y. Av-Gay et al. Biochemistry 2000njamshidiISS12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    TermTBRXN:MSHAMID conjugated glutathione amidase (Mtb) - ISSnjamshidiISS12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    GL. Newton, Y. Av-Gay et al. A novel mycothiol-dependent detoxification pathway in mycobacteria involving mycothiol S-conjugate amidase. Biochemistry 2000
    CitationCharacterization of Mycobacterium tuberculosis mycothiol S-conjugate amidase. M. Steffek, GL. Newton et al. Biochemistry 2003njamshidiISS12420157|14556638|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    TermTBRXN:MSHAMID conjugated glutathione amidase (Mtb) - ISSnjamshidiISS12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    M. Steffek, GL. Newton et al. Characterization of Mycobacterium tuberculosis mycothiol S-conjugate amidase. Biochemistry 2003
    CitationMycothiol biochemistry. GL. Newton & RC. Fahey Arch. Microbiol. 2002njamshidiIDA12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    TermTBRXN:MSHAMID conjugated glutathione amidase (Mtb) - IDAnjamshidiIDA12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    GL. Newton & RC. Fahey Mycothiol biochemistry. Arch. Microbiol. 2002
    CitationA novel mycothiol-dependent detoxification pathway in mycobacteria involving mycothiol S-conjugate amidase. GL. Newton, Y. Av-Gay et al. Biochemistry 2000njamshidiIDA12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    TermTBRXN:MSHAMID conjugated glutathione amidase (Mtb) - IDAnjamshidiIDA12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    GL. Newton, Y. Av-Gay et al. A novel mycothiol-dependent detoxification pathway in mycobacteria involving mycothiol S-conjugate amidase. Biochemistry 2000
    CitationCharacterization of Mycobacterium tuberculosis mycothiol S-conjugate amidase. M. Steffek, GL. Newton et al. Biochemistry 2003njamshidiIDA12420157|14556638|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    TermTBRXN:MSHAMID conjugated glutathione amidase (Mtb) - IDAnjamshidiIDA12420157|10978158See PMID: 12420157, 10978158 - bimane is just an example of a 'toxin' that conjugates with mycothiol. Has been used experimentally (actually monobromobimane used in the experiments but for simplicity [to avoid additional Br transport], just bimane used - also note that this will disrupt the charge balance for bmnmsh synthesis rxn: BMNMSH). Also PMID 14556638 - multiple drugs can bind mycothiol, and MCA appears to be able to hydrolyze the bonds for many of them. More detailed describes are out of the scope of the current reconstruction.
    M. Steffek, GL. Newton et al. Characterization of Mycobacterium tuberculosis mycothiol S-conjugate amidase. Biochemistry 2003

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