TnSeqCorr

Top 10 genes with highest correlation to Rv3528c/-:

update plotcorrelationlink to info on gene
Rv3210c/- (cc=0.7172) info on Rv3210c/-
Rv0642c/mmaA4 (cc=0.6187) info on Rv0642c/mmaA4
Rv1500/- (cc=0.618) info on Rv1500/-
Rv1925/fadD31 (cc=0.6117) info on Rv1925/fadD31
Rv0055/rpsR1 (cc=0.6065) info on Rv0055/rpsR1
Rv2544/lppB (cc=0.6054) info on Rv2544/lppB
Rv3524/- (cc=0.6051) info on Rv3524/-
Rv3152/nuoH (cc=0.604) info on Rv3152/nuoH
Rv2548/vapC19 (cc=0.599) info on Rv2548/vapC19
Rv1724c/- (cc=0.5811) info on Rv1724c/-

Correlation of Rv3528c/- with Rv2548/vapC19

Normalized LFCs for Rv3528c/-:
(description and provenance of datasets)
Rv3528c/-Rv2548/vapC19
Fe_supp_jason_reseq

0.838

0.63

low_pH_jason_reseq

-0.607

-0.087

NO_jason_reseq

0.137

-1.124

B6_jason_reseq

0.547

-3.129

MHCII_jason_reseq

0.445

-1.396

Isoniazid02

-0.068

0.499

Rifampicin4

0.0

-0.403

Ethambutol3

-0.449

0.621

Meropenem3

-0.442

0.034

Vancomycin16

0.353

0.334

Rv2680_day32

-0.186

0.017

H37Rv_KO_MarP

-0.054

-0.22

hypoxia_3wks

-0.833

0.0

hypoxia_6wks

0.967

0.0

glycerol

0.102

-0.961

cholesterol

-0.652

-0.811

AJ

1.356

-0.677

Bibs02

0.956

2.277

Bibs02c

0.812

0.643

BL6

0.97

0.661

BL6a

2.408

2.307

BXD01

1.562

1.936

BXD010

1.676

1.95

BXD011

1.705

2.089

BXD03

2.078

1.217

BXD04

1.619

1.65

BXD05

2.306

2.049

BXD06

1.881

1.943

BXD07

2.076

2.508

BXD08

1.617

2.196

BXD09

1.922

2.123

CAST

0.117

-0.752

CCcont

1.492

1.764

DS01

0.551

0.388

DS02

1.459

0.54

DS04

1.248

2.02

DS0c

-0.809

-1.411

GP01

1.216

1.199

GP02

-0.141

-0.466

GP0c

0.0

-0.425

NOD

-0.12

-0.895

NZO

-0.465

-1.394

PWK

0.615

-0.324

H37Rv_KO_CtpC

2.026

1.218

H37Rv_KO_CtpD

0.662

2.7

H37Rv_KO_Rv1272

2.217

0.406

H37Rv_KO_SugABC

1.188

0.73

H37Rv_KO_MbtN

1.632

0.076

Trans05

0.725

1.696

macrophage_unactivated

0.89

0.953

IL1

0.243

0.575

Rapamycin

0.0

-0.654

Tcell

0.762

0.43

GMCSF

0.145

0.349

IFNab

-0.088

-0.06

IFNg

0.754

-0.569

IFNg_GMCSF1

-0.273

-0.223

Rv1432_day32

-0.168

0.516

Rv1565c_day32

-0.357

1.193

secA2_input

0.377

-1.368

delta_Rv3594

0.731

0.376

delta_Rv3717

-0.135

0.92

delta_Rv3811

0.219

0.526

delta_Rv0954

-0.211

-0.634

PonA1

-0.645

-1.604

EccD1_KO

-1.085

-0.622

EspI_KO

-0.713

-0.761

PE35_KO

-0.403

-0.303

PPE68_KO

-0.326

-0.218

glycerol2

0.598

0.388

lignocerate

1.391

0.218

oleate

0.136

0.302

phosphatidylcholine

0.933

0.515

acetate

0.999

0.148

glucAc

1.377

-0.355

Rv0950ko

0.742

-1.447

Rv1096ko

0.48

-1.176

Rv3684ko

0.318

-1.402

delta_otsA_trehalose

-1.179

0.134