Top 10 genes with highest correlation to Rv2234/ptpA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0446c/- | (cc=0.4282) | info on Rv0446c/- |
| Rv0173/lprK | (cc=0.4183) | info on Rv0173/lprK |
| Rv1131/prpC | (cc=0.4099) | info on Rv1131/prpC |
| Rv0380c/- | (cc=0.3919) | info on Rv0380c/- |
| Rv2218/lipA | (cc=0.3869) | info on Rv2218/lipA |
| Rv0926c/- | (cc=0.3853) | info on Rv0926c/- |
| Rv3025c/iscS | (cc=0.3829) | info on Rv3025c/iscS |
| Rv0855/far | (cc=0.376) | info on Rv0855/far |
| Rv2857c/- | (cc=0.373) | info on Rv2857c/- |
| Rv3763/lpqH | (cc=0.3662) | info on Rv3763/lpqH |
Correlation of Rv2234/ptpA with Rv2218/lipA
Normalized LFCs for Rv2234/ptpA:
(description and provenance of datasets)
| Rv2234/ptpA | Rv2218/lipA | |
| Fe_supp_jason_reseq | 1.032 | 1.228 |
| low_pH_jason_reseq | -0.714 | -0.371 |
| NO_jason_reseq | 0.971 | -0.914 |
| B6_jason_reseq | -0.143 | 0.991 |
| MHCII_jason_reseq | 1.228 | 0.572 |
| Isoniazid02 | 0.0 | 0.0 |
| Rifampicin4 | 0.539 | 0.0 |
| Ethambutol3 | 0.207 | 0.845 |
| Meropenem3 | 0.22 | 0.435 |
| Vancomycin16 | 0.17 | 0.0 |
| Rv2680_day32 | -1.672 | 0.0 |
| H37Rv_KO_MarP | 1.23 | 0.0 |
| hypoxia_3wks | 0.299 | 0.933 |
| hypoxia_6wks | 0.418 | 0.334 |
| glycerol | 0.547 | 1.24 |
| cholesterol | -0.645 | 0.435 |
| AJ | 0.145 | -0.346 |
| Bibs02 | -0.536 | 0.0 |
| Bibs02c | -1.905 | 0.274 |
| BL6 | 0.151 | 1.346 |
| BL6a | -0.527 | 0.595 |
| BXD01 | -0.057 | 0.392 |
| BXD010 | -0.358 | 0.787 |
| BXD011 | -0.084 | 0.167 |
| BXD03 | -0.397 | -0.202 |
| BXD04 | 1.19 | 0.979 |
| BXD05 | 0.2 | 1.38 |
| BXD06 | -0.51 | 0.82 |
| BXD07 | 0.927 | 1.345 |
| BXD08 | 0.258 | 1.255 |
| BXD09 | -0.158 | 0.916 |
| CAST | 0.624 | 0.0 |
| CCcont | 0.622 | 0.667 |
| DS01 | -0.265 | 0.159 |
| DS02 | -1.355 | -0.704 |
| DS04 | 0.101 | 1.036 |
| DS0c | -0.432 | 0.146 |
| GP01 | -0.347 | 0.067 |
| GP02 | 0.489 | 2.166 |
| GP0c | -0.31 | 0.0 |
| NOD | -1.152 | -0.727 |
| NZO | -0.92 | -0.845 |
| PWK | -0.575 | -0.635 |
| H37Rv_KO_CtpC | 0.165 | -0.688 |
| H37Rv_KO_CtpD | 0.706 | 1.454 |
| H37Rv_KO_Rv1272 | -0.356 | -0.21 |
| H37Rv_KO_SugABC | 0.91 | 2.612 |
| H37Rv_KO_MbtN | -0.034 | -0.24 |
| Trans05 | 0.661 | -0.195 |
| macrophage_unactivated | 1.247 | 0.83 |
| IL1 | 0.193 | 0.78 |
| Rapamycin | -1.114 | 1.046 |
| Tcell | -0.042 | 1.352 |
| GMCSF | 0.106 | 1.281 |
| IFNab | 0.348 | 1.865 |
| IFNg | 0.802 | 1.97 |
| IFNg_GMCSF1 | -0.085 | 1.304 |
| Rv1432_day32 | -0.098 | 0.0 |
| Rv1565c_day32 | -0.674 | -0.235 |
| secA2_input | 0.756 | 0.092 |
| delta_Rv3594 | -0.252 | 1.53 |
| delta_Rv3717 | -0.367 | 0.228 |
| delta_Rv3811 | -0.036 | 0.507 |
| delta_Rv0954 | -0.6 | -0.266 |
| PonA1 | -0.783 | -0.372 |
| EccD1_KO | -0.286 | 0.0 |
| EspI_KO | -1.158 | 1.417 |
| PE35_KO | -1.076 | 0.467 |
| PPE68_KO | -1.609 | 0.262 |
| glycerol2 | -0.525 | -0.27 |
| lignocerate | -0.541 | -1.078 |
| oleate | -0.291 | 0.523 |
| phosphatidylcholine | -0.126 | 0.161 |
| acetate | -0.738 | 0.369 |
| glucAc | -0.471 | -1.164 |
| Rv0950ko | 0.938 | 0.639 |
| Rv1096ko | 1.532 | 1.016 |
| Rv3684ko | -0.233 | -0.524 |
| delta_otsA_trehalose | 1.289 | 1.098 |