Top 10 genes with highest correlation to Rv2234/ptpA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0446c/- | (cc=0.4282) | info on Rv0446c/- |
| Rv0173/lprK | (cc=0.4183) | info on Rv0173/lprK |
| Rv1131/prpC | (cc=0.4099) | info on Rv1131/prpC |
| Rv0380c/- | (cc=0.3919) | info on Rv0380c/- |
| Rv2218/lipA | (cc=0.3869) | info on Rv2218/lipA |
| Rv0926c/- | (cc=0.3853) | info on Rv0926c/- |
| Rv3025c/iscS | (cc=0.3829) | info on Rv3025c/iscS |
| Rv0855/far | (cc=0.376) | info on Rv0855/far |
| Rv2857c/- | (cc=0.373) | info on Rv2857c/- |
| Rv3763/lpqH | (cc=0.3662) | info on Rv3763/lpqH |
Correlation of Rv2234/ptpA with Rv0173/lprK
Normalized LFCs for Rv2234/ptpA:
(description and provenance of datasets)
| Rv2234/ptpA | Rv0173/lprK | |
| Fe_supp_jason_reseq | 1.032 | 0.56 |
| low_pH_jason_reseq | -0.714 | 0.276 |
| NO_jason_reseq | 0.971 | 2.326 |
| B6_jason_reseq | -0.143 | 0.3 |
| MHCII_jason_reseq | 1.228 | -1.601 |
| Isoniazid02 | 0.0 | -0.127 |
| Rifampicin4 | 0.539 | 2.044 |
| Ethambutol3 | 0.207 | 1.141 |
| Meropenem3 | 0.22 | 2.5 |
| Vancomycin16 | 0.17 | 2.327 |
| Rv2680_day32 | -1.672 | -0.318 |
| H37Rv_KO_MarP | 1.23 | 0.199 |
| hypoxia_3wks | 0.299 | 2.464 |
| hypoxia_6wks | 0.418 | 1.94 |
| glycerol | 0.547 | 0.282 |
| cholesterol | -0.645 | 1.124 |
| AJ | 0.145 | 0.361 |
| Bibs02 | -0.536 | -3.498 |
| Bibs02c | -1.905 | -2.828 |
| BL6 | 0.151 | 0.437 |
| BL6a | -0.527 | -1.324 |
| BXD01 | -0.057 | 0.896 |
| BXD010 | -0.358 | 0.418 |
| BXD011 | -0.084 | 0.448 |
| BXD03 | -0.397 | 0.851 |
| BXD04 | 1.19 | 0.589 |
| BXD05 | 0.2 | 0.6 |
| BXD06 | -0.51 | 0.227 |
| BXD07 | 0.927 | 1.731 |
| BXD08 | 0.258 | 0.309 |
| BXD09 | -0.158 | 0.997 |
| CAST | 0.624 | -0.771 |
| CCcont | 0.622 | 0.09 |
| DS01 | -0.265 | -3.119 |
| DS02 | -1.355 | -1.528 |
| DS04 | 0.101 | -0.124 |
| DS0c | -0.432 | -1.782 |
| GP01 | -0.347 | -1.4 |
| GP02 | 0.489 | -1.445 |
| GP0c | -0.31 | -0.735 |
| NOD | -1.152 | 0.049 |
| NZO | -0.92 | 0.519 |
| PWK | -0.575 | -1.688 |
| H37Rv_KO_CtpC | 0.165 | 0.028 |
| H37Rv_KO_CtpD | 0.706 | -0.192 |
| H37Rv_KO_Rv1272 | -0.356 | -0.775 |
| H37Rv_KO_SugABC | 0.91 | 1.175 |
| H37Rv_KO_MbtN | -0.034 | 0.079 |
| Trans05 | 0.661 | 1.319 |
| macrophage_unactivated | 1.247 | -0.568 |
| IL1 | 0.193 | -1.747 |
| Rapamycin | -1.114 | -1.433 |
| Tcell | -0.042 | -1.453 |
| GMCSF | 0.106 | 0.512 |
| IFNab | 0.348 | 0.505 |
| IFNg | 0.802 | 0.5 |
| IFNg_GMCSF1 | -0.085 | 0.302 |
| Rv1432_day32 | -0.098 | -0.572 |
| Rv1565c_day32 | -0.674 | -1.966 |
| secA2_input | 0.756 | 0.02 |
| delta_Rv3594 | -0.252 | -0.497 |
| delta_Rv3717 | -0.367 | 0.536 |
| delta_Rv3811 | -0.036 | -0.424 |
| delta_Rv0954 | -0.6 | -0.31 |
| PonA1 | -0.783 | -0.031 |
| EccD1_KO | -0.286 | -0.875 |
| EspI_KO | -1.158 | -0.473 |
| PE35_KO | -1.076 | -0.318 |
| PPE68_KO | -1.609 | -0.432 |
| glycerol2 | -0.525 | -1.03 |
| lignocerate | -0.541 | -3.766 |
| oleate | -0.291 | 0.173 |
| phosphatidylcholine | -0.126 | -1.595 |
| acetate | -0.738 | -0.71 |
| glucAc | -0.471 | -0.556 |
| Rv0950ko | 0.938 | 0.516 |
| Rv1096ko | 1.532 | 0.591 |
| Rv3684ko | -0.233 | 1.179 |
| delta_otsA_trehalose | 1.289 | 1.387 |