Top 10 genes with highest correlation to Rv2055c/rpsR2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0027/- | (cc=0.4744) | info on Rv0027/- |
| Rv2102/- | (cc=0.4673) | info on Rv2102/- |
| Rv0056/rplI | (cc=0.4427) | info on Rv0056/rplI |
| Rv0813c/- | (cc=0.4409) | info on Rv0813c/- |
| Rv2865/relF | (cc=0.4384) | info on Rv2865/relF |
| Rv1822/pgsA2 | (cc=0.4372) | info on Rv1822/pgsA2 |
| Rv1003/- | (cc=0.4184) | info on Rv1003/- |
| Rv1253/deaD | (cc=0.4127) | info on Rv1253/deaD |
| Rv1628c/- | (cc=0.4105) | info on Rv1628c/- |
| Rv2462c/tig | (cc=0.4082) | info on Rv2462c/tig |
Correlation of Rv2055c/rpsR2 with Rv0027/-
Normalized LFCs for Rv2055c/rpsR2:
(description and provenance of datasets)
| Rv2055c/rpsR2 | Rv0027/- | |
| Fe_supp_jason_reseq | -1.051 | -2.546 |
| low_pH_jason_reseq | 1.179 | -0.015 |
| NO_jason_reseq | -0.436 | -0.436 |
| B6_jason_reseq | -1.502 | -1.991 |
| MHCII_jason_reseq | -2.152 | -0.745 |
| Isoniazid02 | -0.37 | 0.237 |
| Rifampicin4 | 1.091 | 1.086 |
| Ethambutol3 | 0.0 | 0.364 |
| Meropenem3 | 0.352 | 0.052 |
| Vancomycin16 | 0.122 | 0.761 |
| Rv2680_day32 | 0.0 | 0.786 |
| H37Rv_KO_MarP | 1.429 | -0.121 |
| hypoxia_3wks | -1.655 | 0.594 |
| hypoxia_6wks | 0.503 | -1.449 |
| glycerol | 2.408 | -0.275 |
| cholesterol | 0.14 | -1.602 |
| AJ | -1.76 | -0.101 |
| Bibs02 | -0.935 | -1.619 |
| Bibs02c | -1.07 | 0.931 |
| BL6 | -1.479 | -2.078 |
| BL6a | -0.529 | 0.936 |
| BXD01 | -0.988 | -0.862 |
| BXD010 | 0.791 | -1.999 |
| BXD011 | 1.295 | -0.237 |
| BXD03 | -0.195 | 0.31 |
| BXD04 | -0.278 | -0.977 |
| BXD05 | -0.845 | -1.126 |
| BXD06 | 0.044 | -0.884 |
| BXD07 | 1.093 | -0.223 |
| BXD08 | -0.68 | -0.992 |
| BXD09 | 0.337 | -0.93 |
| CAST | 0.0 | -0.951 |
| CCcont | -1.241 | -2.48 |
| DS01 | 0.63 | -0.156 |
| DS02 | -1.649 | -0.969 |
| DS04 | -0.28 | -1.921 |
| DS0c | -1.97 | -2.684 |
| GP01 | -1.069 | -0.506 |
| GP02 | -0.756 | 0.404 |
| GP0c | -0.595 | -0.381 |
| NOD | -0.076 | -2.224 |
| NZO | -1.133 | -0.889 |
| PWK | 1.518 | -0.575 |
| H37Rv_KO_CtpC | 3.303 | -0.302 |
| H37Rv_KO_CtpD | -0.339 | 2.677 |
| H37Rv_KO_Rv1272 | 2.593 | 1.308 |
| H37Rv_KO_SugABC | -1.073 | 1.064 |
| H37Rv_KO_MbtN | 1.699 | -0.769 |
| Trans05 | -0.044 | -0.421 |
| macrophage_unactivated | 0.246 | 0.363 |
| IL1 | -0.329 | -0.925 |
| Rapamycin | 3.228 | 0.988 |
| Tcell | -0.961 | -0.134 |
| GMCSF | 0.935 | 1.682 |
| IFNab | 1.605 | 0.877 |
| IFNg | -1.061 | 0.307 |
| IFNg_GMCSF1 | 1.948 | 1.012 |
| Rv1432_day32 | 0.541 | -0.434 |
| Rv1565c_day32 | 0.0 | 0.362 |
| secA2_input | 1.523 | 0.585 |
| delta_Rv3594 | 3.001 | 2.226 |
| delta_Rv3717 | 3.81 | 2.975 |
| delta_Rv3811 | 2.076 | 2.277 |
| delta_Rv0954 | 3.451 | 0.994 |
| PonA1 | 2.373 | -0.585 |
| EccD1_KO | 1.23 | 0.536 |
| EspI_KO | -1.611 | -0.234 |
| PE35_KO | -0.181 | -0.117 |
| PPE68_KO | -1.35 | -0.218 |
| glycerol2 | -1.297 | -0.657 |
| lignocerate | -0.807 | -1.218 |
| oleate | -0.94 | 0.181 |
| phosphatidylcholine | -0.929 | -0.819 |
| acetate | 1.096 | -1.752 |
| glucAc | -0.957 | -2.515 |
| Rv0950ko | 0.407 | 0.124 |
| Rv1096ko | -0.087 | 0.163 |
| Rv3684ko | -2.057 | -0.943 |
| delta_otsA_trehalose | 0.107 | -0.979 |