Top 10 genes with highest correlation to Rv1422/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3919c/gid | (cc=0.5365) | info on Rv3919c/gid |
| Rv1079/metB | (cc=0.5169) | info on Rv1079/metB |
| Rv2978c/- | (cc=0.5113) | info on Rv2978c/- |
| Rv1633/uvrB | (cc=0.4985) | info on Rv1633/uvrB |
| Rv3841/bfrB | (cc=0.498) | info on Rv3841/bfrB |
| Rv2366c/- | (cc=0.4953) | info on Rv2366c/- |
| Rv0653c/- | (cc=0.4941) | info on Rv0653c/- |
| Rv2734/- | (cc=0.4927) | info on Rv2734/- |
| Rv0150c/- | (cc=0.4792) | info on Rv0150c/- |
| Rv0956/purN | (cc=0.4749) | info on Rv0956/purN |
Correlation of Rv1422/- with Rv3841/bfrB
Normalized LFCs for Rv1422/-:
(description and provenance of datasets)
| Rv1422/- | Rv3841/bfrB | |
| Fe_supp_jason_reseq | 1.358 | -1.646 |
| low_pH_jason_reseq | -0.234 | -1.946 |
| NO_jason_reseq | 0.068 | 0.449 |
| B6_jason_reseq | -1.947 | -1.639 |
| MHCII_jason_reseq | -1.4 | -0.884 |
| Isoniazid02 | -0.579 | -0.191 |
| Rifampicin4 | 0.138 | -0.173 |
| Ethambutol3 | 0.753 | 0.345 |
| Meropenem3 | -0.383 | -0.157 |
| Vancomycin16 | -1.61 | 0.753 |
| Rv2680_day32 | -0.19 | -1.763 |
| H37Rv_KO_MarP | 2.572 | 0.837 |
| hypoxia_3wks | -2.237 | 0.0 |
| hypoxia_6wks | -1.8 | -2.297 |
| glycerol | -2.06 | -3.152 |
| cholesterol | -0.114 | -0.902 |
| AJ | -1.262 | -1.111 |
| Bibs02 | -1.191 | 1.162 |
| Bibs02c | -0.233 | -0.499 |
| BL6 | 1.148 | -0.082 |
| BL6a | 0.199 | 0.854 |
| BXD01 | 0.852 | 0.684 |
| BXD010 | 1.191 | 1.452 |
| BXD011 | -0.186 | 2.148 |
| BXD03 | 0.191 | 1.831 |
| BXD04 | 0.518 | 0.325 |
| BXD05 | 1.044 | 0.636 |
| BXD06 | 1.083 | 0.785 |
| BXD07 | 0.961 | 0.691 |
| BXD08 | 0.636 | 1.29 |
| BXD09 | 0.617 | 1.12 |
| CAST | -0.546 | -0.809 |
| CCcont | 0.531 | -0.93 |
| DS01 | 0.0 | -0.628 |
| DS02 | -1.676 | -1.623 |
| DS04 | -1.32 | -1.134 |
| DS0c | -1.413 | -0.577 |
| GP01 | 1.051 | 1.795 |
| GP02 | 0.406 | -0.371 |
| GP0c | 1.159 | 1.582 |
| NOD | -1.956 | -1.399 |
| NZO | -0.757 | -0.701 |
| PWK | -0.465 | -0.085 |
| H37Rv_KO_CtpC | 0.525 | -0.107 |
| H37Rv_KO_CtpD | 0.276 | 1.794 |
| H37Rv_KO_Rv1272 | 0.218 | 0.666 |
| H37Rv_KO_SugABC | -0.293 | 0.26 |
| H37Rv_KO_MbtN | 0.959 | 0.702 |
| Trans05 | -0.386 | 0.769 |
| macrophage_unactivated | -0.578 | 0.436 |
| IL1 | -1.163 | 0.231 |
| Rapamycin | -0.632 | 0.377 |
| Tcell | -0.485 | -0.267 |
| GMCSF | 0.356 | 0.325 |
| IFNab | -0.03 | 1.07 |
| IFNg | -0.428 | 0.126 |
| IFNg_GMCSF1 | -0.097 | 3.29 |
| Rv1432_day32 | -0.039 | 0.301 |
| Rv1565c_day32 | -2.854 | -1.538 |
| secA2_input | -0.762 | -0.471 |
| delta_Rv3594 | 2.034 | 0.367 |
| delta_Rv3717 | 1.443 | 0.856 |
| delta_Rv3811 | 1.377 | 0.525 |
| delta_Rv0954 | 1.081 | -0.636 |
| PonA1 | -1.154 | 0.422 |
| EccD1_KO | 2.625 | 0.24 |
| EspI_KO | 0.918 | 0.034 |
| PE35_KO | 1.488 | -0.073 |
| PPE68_KO | 1.561 | 0.272 |
| glycerol2 | 0.191 | -2.183 |
| lignocerate | -3.01 | -1.712 |
| oleate | -1.591 | -0.119 |
| phosphatidylcholine | -3.013 | -1.871 |
| acetate | 0.043 | -0.615 |
| glucAc | -0.38 | -1.786 |
| Rv0950ko | 0.488 | 0.042 |
| Rv1096ko | -0.217 | 0.163 |
| Rv3684ko | 0.033 | 0.134 |
| delta_otsA_trehalose | 1.62 | 1.725 |