Top 10 genes with highest correlation to Rv1422/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3919c/gid | (cc=0.5365) | info on Rv3919c/gid |
| Rv1079/metB | (cc=0.5169) | info on Rv1079/metB |
| Rv2978c/- | (cc=0.5113) | info on Rv2978c/- |
| Rv1633/uvrB | (cc=0.4985) | info on Rv1633/uvrB |
| Rv3841/bfrB | (cc=0.498) | info on Rv3841/bfrB |
| Rv2366c/- | (cc=0.4953) | info on Rv2366c/- |
| Rv0653c/- | (cc=0.4941) | info on Rv0653c/- |
| Rv2734/- | (cc=0.4927) | info on Rv2734/- |
| Rv0150c/- | (cc=0.4792) | info on Rv0150c/- |
| Rv0956/purN | (cc=0.4749) | info on Rv0956/purN |
Correlation of Rv1422/- with Rv1633/uvrB
Normalized LFCs for Rv1422/-:
(description and provenance of datasets)
| Rv1422/- | Rv1633/uvrB | |
| Fe_supp_jason_reseq | 1.358 | 2.98 |
| low_pH_jason_reseq | -0.234 | 0.507 |
| NO_jason_reseq | 0.068 | -0.517 |
| B6_jason_reseq | -1.947 | -1.215 |
| MHCII_jason_reseq | -1.4 | -0.73 |
| Isoniazid02 | -0.579 | -0.648 |
| Rifampicin4 | 0.138 | 0.022 |
| Ethambutol3 | 0.753 | 0.067 |
| Meropenem3 | -0.383 | -0.71 |
| Vancomycin16 | -1.61 | -1.326 |
| Rv2680_day32 | -0.19 | -0.518 |
| H37Rv_KO_MarP | 2.572 | -0.563 |
| hypoxia_3wks | -2.237 | -2.743 |
| hypoxia_6wks | -1.8 | -2.575 |
| glycerol | -2.06 | 1.565 |
| cholesterol | -0.114 | 0.932 |
| AJ | -1.262 | -0.124 |
| Bibs02 | -1.191 | 0.348 |
| Bibs02c | -0.233 | 0.958 |
| BL6 | 1.148 | 1.479 |
| BL6a | 0.199 | 2.274 |
| BXD01 | 0.852 | 1.401 |
| BXD010 | 1.191 | 1.514 |
| BXD011 | -0.186 | 2.168 |
| BXD03 | 0.191 | 1.77 |
| BXD04 | 0.518 | 1.523 |
| BXD05 | 1.044 | 1.762 |
| BXD06 | 1.083 | 1.844 |
| BXD07 | 0.961 | 1.792 |
| BXD08 | 0.636 | 1.572 |
| BXD09 | 0.617 | 1.902 |
| CAST | -0.546 | -0.692 |
| CCcont | 0.531 | 3.594 |
| DS01 | 0.0 | 0.12 |
| DS02 | -1.676 | 0.318 |
| DS04 | -1.32 | 0.888 |
| DS0c | -1.413 | 0.596 |
| GP01 | 1.051 | 1.062 |
| GP02 | 0.406 | 0.159 |
| GP0c | 1.159 | 2.173 |
| NOD | -1.956 | -1.199 |
| NZO | -0.757 | -0.897 |
| PWK | -0.465 | -0.732 |
| H37Rv_KO_CtpC | 0.525 | 2.151 |
| H37Rv_KO_CtpD | 0.276 | 2.17 |
| H37Rv_KO_Rv1272 | 0.218 | 2.201 |
| H37Rv_KO_SugABC | -0.293 | 1.396 |
| H37Rv_KO_MbtN | 0.959 | 3.197 |
| Trans05 | -0.386 | 1.691 |
| macrophage_unactivated | -0.578 | 0.792 |
| IL1 | -1.163 | -0.469 |
| Rapamycin | -0.632 | 0.15 |
| Tcell | -0.485 | 0.746 |
| GMCSF | 0.356 | 0.0 |
| IFNab | -0.03 | 1.817 |
| IFNg | -0.428 | 0.067 |
| IFNg_GMCSF1 | -0.097 | -0.408 |
| Rv1432_day32 | -0.039 | -0.617 |
| Rv1565c_day32 | -2.854 | -0.706 |
| secA2_input | -0.762 | 1.027 |
| delta_Rv3594 | 2.034 | 0.829 |
| delta_Rv3717 | 1.443 | 0.982 |
| delta_Rv3811 | 1.377 | 0.671 |
| delta_Rv0954 | 1.081 | 0.178 |
| PonA1 | -1.154 | -0.372 |
| EccD1_KO | 2.625 | -0.595 |
| EspI_KO | 0.918 | -0.248 |
| PE35_KO | 1.488 | -0.114 |
| PPE68_KO | 1.561 | -0.026 |
| glycerol2 | 0.191 | -1.772 |
| lignocerate | -3.01 | -1.842 |
| oleate | -1.591 | -2.678 |
| phosphatidylcholine | -3.013 | -2.389 |
| acetate | 0.043 | -0.09 |
| glucAc | -0.38 | 0.511 |
| Rv0950ko | 0.488 | -0.383 |
| Rv1096ko | -0.217 | -0.208 |
| Rv3684ko | 0.033 | -0.295 |
| delta_otsA_trehalose | 1.62 | 0.476 |