Top 10 genes with highest correlation to Rv1422/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3919c/gid | (cc=0.5365) | info on Rv3919c/gid |
| Rv1079/metB | (cc=0.5169) | info on Rv1079/metB |
| Rv2978c/- | (cc=0.5113) | info on Rv2978c/- |
| Rv1633/uvrB | (cc=0.4985) | info on Rv1633/uvrB |
| Rv3841/bfrB | (cc=0.498) | info on Rv3841/bfrB |
| Rv2366c/- | (cc=0.4953) | info on Rv2366c/- |
| Rv0653c/- | (cc=0.4941) | info on Rv0653c/- |
| Rv2734/- | (cc=0.4927) | info on Rv2734/- |
| Rv0150c/- | (cc=0.4792) | info on Rv0150c/- |
| Rv0956/purN | (cc=0.4749) | info on Rv0956/purN |
Correlation of Rv1422/- with Rv3919c/gid
Normalized LFCs for Rv1422/-:
(description and provenance of datasets)
| Rv1422/- | Rv3919c/gid | |
| Fe_supp_jason_reseq | 1.358 | 1.249 |
| low_pH_jason_reseq | -0.234 | -0.241 |
| NO_jason_reseq | 0.068 | -0.312 |
| B6_jason_reseq | -1.947 | -1.479 |
| MHCII_jason_reseq | -1.4 | -2.338 |
| Isoniazid02 | -0.579 | -3.195 |
| Rifampicin4 | 0.138 | -0.872 |
| Ethambutol3 | 0.753 | -2.085 |
| Meropenem3 | -0.383 | -2.862 |
| Vancomycin16 | -1.61 | -2.258 |
| Rv2680_day32 | -0.19 | -0.161 |
| H37Rv_KO_MarP | 2.572 | -0.301 |
| hypoxia_3wks | -2.237 | -0.662 |
| hypoxia_6wks | -1.8 | -1.288 |
| glycerol | -2.06 | 1.877 |
| cholesterol | -0.114 | -0.105 |
| AJ | -1.262 | -0.346 |
| Bibs02 | -1.191 | -0.201 |
| Bibs02c | -0.233 | -0.399 |
| BL6 | 1.148 | 0.559 |
| BL6a | 0.199 | 1.099 |
| BXD01 | 0.852 | 1.094 |
| BXD010 | 1.191 | 0.629 |
| BXD011 | -0.186 | 1.147 |
| BXD03 | 0.191 | 0.091 |
| BXD04 | 0.518 | 0.124 |
| BXD05 | 1.044 | 1.021 |
| BXD06 | 1.083 | 0.597 |
| BXD07 | 0.961 | 1.163 |
| BXD08 | 0.636 | 0.71 |
| BXD09 | 0.617 | 0.563 |
| CAST | -0.546 | -0.537 |
| CCcont | 0.531 | 1.322 |
| DS01 | 0.0 | -0.551 |
| DS02 | -1.676 | -0.325 |
| DS04 | -1.32 | -0.141 |
| DS0c | -1.413 | -0.602 |
| GP01 | 1.051 | 0.396 |
| GP02 | 0.406 | -0.353 |
| GP0c | 1.159 | 1.838 |
| NOD | -1.956 | -1.072 |
| NZO | -0.757 | 0.199 |
| PWK | -0.465 | -0.544 |
| H37Rv_KO_CtpC | 0.525 | 0.688 |
| H37Rv_KO_CtpD | 0.276 | 0.729 |
| H37Rv_KO_Rv1272 | 0.218 | 1.619 |
| H37Rv_KO_SugABC | -0.293 | -0.148 |
| H37Rv_KO_MbtN | 0.959 | 2.194 |
| Trans05 | -0.386 | 1.847 |
| macrophage_unactivated | -0.578 | 0.167 |
| IL1 | -1.163 | -2.435 |
| Rapamycin | -0.632 | -1.712 |
| Tcell | -0.485 | -0.368 |
| GMCSF | 0.356 | 0.14 |
| IFNab | -0.03 | -0.432 |
| IFNg | -0.428 | -0.807 |
| IFNg_GMCSF1 | -0.097 | -0.742 |
| Rv1432_day32 | -0.039 | 0.55 |
| Rv1565c_day32 | -2.854 | -1.418 |
| secA2_input | -0.762 | 1.163 |
| delta_Rv3594 | 2.034 | 1.156 |
| delta_Rv3717 | 1.443 | 1.815 |
| delta_Rv3811 | 1.377 | 1.822 |
| delta_Rv0954 | 1.081 | -0.588 |
| PonA1 | -1.154 | -0.904 |
| EccD1_KO | 2.625 | 0.937 |
| EspI_KO | 0.918 | -0.174 |
| PE35_KO | 1.488 | -0.464 |
| PPE68_KO | 1.561 | 0.278 |
| glycerol2 | 0.191 | -1.267 |
| lignocerate | -3.01 | -2.056 |
| oleate | -1.591 | -1.891 |
| phosphatidylcholine | -3.013 | -2.255 |
| acetate | 0.043 | -0.663 |
| glucAc | -0.38 | -0.754 |
| Rv0950ko | 0.488 | 1.731 |
| Rv1096ko | -0.217 | 1.414 |
| Rv3684ko | 0.033 | 0.714 |
| delta_otsA_trehalose | 1.62 | 0.195 |