Top 10 genes with highest correlation to Rv1290A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1725c/- | (cc=0.5786) | info on Rv1725c/- |
| Rv2613c/- | (cc=0.5346) | info on Rv2613c/- |
| Rv0089/- | (cc=0.5223) | info on Rv0089/- |
| Rv3167c/- | (cc=0.522) | info on Rv3167c/- |
| Rv2019/- | (cc=0.5198) | info on Rv2019/- |
| Rv2517c/- | (cc=0.5142) | info on Rv2517c/- |
| Rv0396/- | (cc=0.5124) | info on Rv0396/- |
| Rv2405/- | (cc=0.5115) | info on Rv2405/- |
| Rv3056/dinP | (cc=0.5052) | info on Rv3056/dinP |
| Rv1999c/- | (cc=0.5003) | info on Rv1999c/- |
Correlation of Rv1290A/- with Rv1725c/-
Normalized LFCs for Rv1290A/-:
(description and provenance of datasets)
| Rv1290A/- | Rv1725c/- | |
| Fe_supp_jason_reseq | 1.441 | -0.071 |
| low_pH_jason_reseq | -1.282 | -0.852 |
| NO_jason_reseq | 0.11 | 0.333 |
| B6_jason_reseq | -0.771 | -0.975 |
| MHCII_jason_reseq | 0.935 | 0.257 |
| Isoniazid02 | -0.685 | 0.205 |
| Rifampicin4 | -0.13 | 0.265 |
| Ethambutol3 | -0.349 | 0.255 |
| Meropenem3 | 1.52 | 0.315 |
| Vancomycin16 | -0.194 | -0.085 |
| Rv2680_day32 | -0.359 | 0.205 |
| H37Rv_KO_MarP | 0.025 | 0.598 |
| hypoxia_3wks | -0.339 | 0.0 |
| hypoxia_6wks | -1.539 | -0.136 |
| glycerol | -1.624 | 0.053 |
| cholesterol | -0.218 | -0.219 |
| AJ | -0.602 | 0.513 |
| Bibs02 | -0.223 | 0.0 |
| Bibs02c | -0.796 | -0.194 |
| BL6 | -0.1 | 0.439 |
| BL6a | -1.538 | -0.277 |
| BXD01 | -1.563 | -0.535 |
| BXD010 | -0.559 | -0.478 |
| BXD011 | -1.384 | -0.33 |
| BXD03 | -0.617 | -0.407 |
| BXD04 | -1.76 | -0.857 |
| BXD05 | -2.96 | -0.532 |
| BXD06 | -1.187 | -0.155 |
| BXD07 | -1.505 | -0.332 |
| BXD08 | -2.361 | 0.1 |
| BXD09 | -1.382 | -0.632 |
| CAST | -0.06 | 0.095 |
| CCcont | -0.937 | -0.114 |
| DS01 | -1.032 | -0.387 |
| DS02 | -0.993 | -1.068 |
| DS04 | 0.119 | 0.284 |
| DS0c | -1.215 | -0.214 |
| GP01 | -0.574 | 0.065 |
| GP02 | 2.507 | 0.381 |
| GP0c | -0.337 | -0.418 |
| NOD | -0.371 | -0.739 |
| NZO | -1.835 | 0.111 |
| PWK | 0.365 | 0.357 |
| H37Rv_KO_CtpC | 0.743 | 0.601 |
| H37Rv_KO_CtpD | -2.438 | -1.686 |
| H37Rv_KO_Rv1272 | -1.022 | 0.895 |
| H37Rv_KO_SugABC | 1.676 | 0.344 |
| H37Rv_KO_MbtN | 1.666 | 0.437 |
| Trans05 | 0.298 | -0.106 |
| macrophage_unactivated | -1.259 | 0.117 |
| IL1 | 0.552 | 0.501 |
| Rapamycin | 0.436 | 0.439 |
| Tcell | -0.166 | -0.485 |
| GMCSF | -1.415 | 0.618 |
| IFNab | -2.331 | 0.057 |
| IFNg | -0.422 | 0.267 |
| IFNg_GMCSF1 | -0.496 | 0.531 |
| Rv1432_day32 | 0.0 | -0.675 |
| Rv1565c_day32 | 0.556 | -0.128 |
| secA2_input | -1.67 | 0.152 |
| delta_Rv3594 | 0.092 | 0.467 |
| delta_Rv3717 | -0.96 | 0.535 |
| delta_Rv3811 | -0.29 | 0.552 |
| delta_Rv0954 | -0.596 | 1.013 |
| PonA1 | -0.439 | -0.111 |
| EccD1_KO | -0.086 | 0.49 |
| EspI_KO | 1.791 | 0.334 |
| PE35_KO | 2.345 | 0.0 |
| PPE68_KO | 1.955 | 0.163 |
| glycerol2 | 1.401 | 1.223 |
| lignocerate | 1.386 | 1.836 |
| oleate | 0.0 | 0.298 |
| phosphatidylcholine | 1.594 | 1.619 |
| acetate | 2.79 | 2.434 |
| glucAc | 1.825 | 2.05 |
| Rv0950ko | 1.251 | -0.235 |
| Rv1096ko | 1.028 | 0.537 |
| Rv3684ko | 2.021 | 0.612 |
| delta_otsA_trehalose | -1.964 | -1.109 |