Top 10 genes with highest correlation to Rv1260/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0755c/PPE12 | (cc=0.602) | info on Rv0755c/PPE12 |
| Rv1646/PE17 | (cc=0.5383) | info on Rv1646/PE17 |
| Rv2808/- | (cc=0.5176) | info on Rv2808/- |
| Rv0669c/- | (cc=0.5018) | info on Rv0669c/- |
| Rv3784/- | (cc=0.486) | info on Rv3784/- |
| Rv1087/PE_PGRS21 | (cc=0.4856) | info on Rv1087/PE_PGRS21 |
| Rv1378c/- | (cc=0.4856) | info on Rv1378c/- |
| Rv3697c/vapC48 | (cc=0.4849) | info on Rv3697c/vapC48 |
| Rv0739/- | (cc=0.4837) | info on Rv0739/- |
| Rv1818c/PE_PGRS33 | (cc=0.4818) | info on Rv1818c/PE_PGRS33 |
Correlation of Rv1260/- with Rv2808/-
Normalized LFCs for Rv1260/-:
(description and provenance of datasets)
| Rv1260/- | Rv2808/- | |
| Fe_supp_jason_reseq | -1.051 | 0.766 |
| low_pH_jason_reseq | -0.555 | -0.124 |
| NO_jason_reseq | -0.743 | 0.69 |
| B6_jason_reseq | 0.641 | 2.801 |
| MHCII_jason_reseq | 0.565 | 1.22 |
| Isoniazid02 | 0.247 | 0.0 |
| Rifampicin4 | -0.141 | 0.791 |
| Ethambutol3 | -0.032 | 0.427 |
| Meropenem3 | 0.0 | 0.444 |
| Vancomycin16 | -0.138 | 0.775 |
| Rv2680_day32 | -0.597 | -3.002 |
| H37Rv_KO_MarP | -0.214 | -0.114 |
| hypoxia_3wks | 0.0 | -0.825 |
| hypoxia_6wks | 0.148 | 0.023 |
| glycerol | 0.607 | -0.066 |
| cholesterol | 0.847 | 0.379 |
| AJ | 0.225 | 1.128 |
| Bibs02 | 0.758 | 0.642 |
| Bibs02c | 0.674 | -0.103 |
| BL6 | -1.235 | -0.255 |
| BL6a | 0.165 | -0.502 |
| BXD01 | 0.074 | 0.222 |
| BXD010 | 0.717 | 0.472 |
| BXD011 | 0.437 | 0.719 |
| BXD03 | -0.573 | 0.266 |
| BXD04 | -0.194 | -0.061 |
| BXD05 | -0.08 | -0.851 |
| BXD06 | -0.209 | 0.246 |
| BXD07 | -0.082 | 0.138 |
| BXD08 | -0.277 | 0.66 |
| BXD09 | -0.062 | -0.314 |
| CAST | 0.484 | 1.565 |
| CCcont | -0.209 | 0.244 |
| DS01 | 0.785 | 0.589 |
| DS02 | 0.857 | 1.175 |
| DS04 | 0.475 | 0.822 |
| DS0c | 0.767 | 0.848 |
| GP01 | -1.091 | -0.654 |
| GP02 | 0.286 | -0.764 |
| GP0c | -0.669 | -0.577 |
| NOD | 1.258 | 2.481 |
| NZO | -0.525 | 1.097 |
| PWK | 0.674 | 0.334 |
| H37Rv_KO_CtpC | 0.221 | 0.976 |
| H37Rv_KO_CtpD | 0.608 | -1.163 |
| H37Rv_KO_Rv1272 | 0.439 | 0.045 |
| H37Rv_KO_SugABC | -0.122 | -0.929 |
| H37Rv_KO_MbtN | 0.611 | 0.264 |
| Trans05 | -0.161 | -1.679 |
| macrophage_unactivated | -0.136 | -0.259 |
| IL1 | -1.317 | -3.168 |
| Rapamycin | -1.022 | -0.948 |
| Tcell | 0.202 | -0.404 |
| GMCSF | -1.172 | -1.853 |
| IFNab | -0.692 | -1.808 |
| IFNg | -0.484 | -2.638 |
| IFNg_GMCSF1 | -0.962 | -1.345 |
| Rv1432_day32 | -0.012 | -1.675 |
| Rv1565c_day32 | 0.066 | -1.139 |
| secA2_input | -1.687 | -0.504 |
| delta_Rv3594 | 0.0 | -0.066 |
| delta_Rv3717 | -0.029 | -1.057 |
| delta_Rv3811 | 0.034 | -1.034 |
| delta_Rv0954 | -0.992 | -1.495 |
| PonA1 | -0.226 | -2.308 |
| EccD1_KO | -0.414 | -0.927 |
| EspI_KO | 0.328 | -0.091 |
| PE35_KO | 0.335 | 0.359 |
| PPE68_KO | 0.442 | -0.544 |
| glycerol2 | 0.708 | -0.433 |
| lignocerate | 0.547 | 0.145 |
| oleate | 0.489 | -0.265 |
| phosphatidylcholine | 1.273 | 0.277 |
| acetate | -0.033 | -0.382 |
| glucAc | 0.02 | 0.088 |
| Rv0950ko | 0.112 | 0.084 |
| Rv1096ko | 0.326 | -0.262 |
| Rv3684ko | 0.0 | -0.481 |
| delta_otsA_trehalose | -0.654 | -2.072 |