Top 10 genes with highest correlation to Rv1260/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0755c/PPE12 | (cc=0.602) | info on Rv0755c/PPE12 |
| Rv1646/PE17 | (cc=0.5383) | info on Rv1646/PE17 |
| Rv2808/- | (cc=0.5176) | info on Rv2808/- |
| Rv0669c/- | (cc=0.5018) | info on Rv0669c/- |
| Rv3784/- | (cc=0.486) | info on Rv3784/- |
| Rv1087/PE_PGRS21 | (cc=0.4856) | info on Rv1087/PE_PGRS21 |
| Rv1378c/- | (cc=0.4856) | info on Rv1378c/- |
| Rv3697c/vapC48 | (cc=0.4849) | info on Rv3697c/vapC48 |
| Rv0739/- | (cc=0.4837) | info on Rv0739/- |
| Rv1818c/PE_PGRS33 | (cc=0.4818) | info on Rv1818c/PE_PGRS33 |
Correlation of Rv1260/- with Rv1087/PE_PGRS21
Normalized LFCs for Rv1260/-:
(description and provenance of datasets)
| Rv1260/- | Rv1087/PE_PGRS21 | |
| Fe_supp_jason_reseq | -1.051 | -1.443 |
| low_pH_jason_reseq | -0.555 | -1.295 |
| NO_jason_reseq | -0.743 | -0.431 |
| B6_jason_reseq | 0.641 | -0.404 |
| MHCII_jason_reseq | 0.565 | -0.066 |
| Isoniazid02 | 0.247 | -1.653 |
| Rifampicin4 | -0.141 | 0.214 |
| Ethambutol3 | -0.032 | 0.196 |
| Meropenem3 | 0.0 | -0.639 |
| Vancomycin16 | -0.138 | -0.865 |
| Rv2680_day32 | -0.597 | 0.842 |
| H37Rv_KO_MarP | -0.214 | 0.162 |
| hypoxia_3wks | 0.0 | -0.427 |
| hypoxia_6wks | 0.148 | -0.727 |
| glycerol | 0.607 | 1.262 |
| cholesterol | 0.847 | 0.519 |
| AJ | 0.225 | 1.155 |
| Bibs02 | 0.758 | 0.782 |
| Bibs02c | 0.674 | 0.838 |
| BL6 | -1.235 | 0.186 |
| BL6a | 0.165 | 0.133 |
| BXD01 | 0.074 | 0.1 |
| BXD010 | 0.717 | 0.2 |
| BXD011 | 0.437 | -0.79 |
| BXD03 | -0.573 | 0.235 |
| BXD04 | -0.194 | -0.487 |
| BXD05 | -0.08 | -0.492 |
| BXD06 | -0.209 | 0.014 |
| BXD07 | -0.082 | -0.43 |
| BXD08 | -0.277 | -0.431 |
| BXD09 | -0.062 | -0.437 |
| CAST | 0.484 | -0.215 |
| CCcont | -0.209 | -0.173 |
| DS01 | 0.785 | -0.072 |
| DS02 | 0.857 | 0.414 |
| DS04 | 0.475 | 0.777 |
| DS0c | 0.767 | -0.11 |
| GP01 | -1.091 | 1.227 |
| GP02 | 0.286 | 1.357 |
| GP0c | -0.669 | 0.136 |
| NOD | 1.258 | 0.944 |
| NZO | -0.525 | -0.144 |
| PWK | 0.674 | 0.358 |
| H37Rv_KO_CtpC | 0.221 | -0.461 |
| H37Rv_KO_CtpD | 0.608 | 1.767 |
| H37Rv_KO_Rv1272 | 0.439 | 0.546 |
| H37Rv_KO_SugABC | -0.122 | 0.362 |
| H37Rv_KO_MbtN | 0.611 | 0.196 |
| Trans05 | -0.161 | 0.323 |
| macrophage_unactivated | -0.136 | -0.919 |
| IL1 | -1.317 | -2.441 |
| Rapamycin | -1.022 | -2.734 |
| Tcell | 0.202 | -1.825 |
| GMCSF | -1.172 | -0.935 |
| IFNab | -0.692 | -2.839 |
| IFNg | -0.484 | -1.497 |
| IFNg_GMCSF1 | -0.962 | -2.061 |
| Rv1432_day32 | -0.012 | 0.568 |
| Rv1565c_day32 | 0.066 | -1.084 |
| secA2_input | -1.687 | -0.551 |
| delta_Rv3594 | 0.0 | 0.095 |
| delta_Rv3717 | -0.029 | -0.109 |
| delta_Rv3811 | 0.034 | -0.254 |
| delta_Rv0954 | -0.992 | -1.503 |
| PonA1 | -0.226 | -0.04 |
| EccD1_KO | -0.414 | -0.023 |
| EspI_KO | 0.328 | -0.06 |
| PE35_KO | 0.335 | 0.219 |
| PPE68_KO | 0.442 | -0.138 |
| glycerol2 | 0.708 | 0.933 |
| lignocerate | 0.547 | 1.382 |
| oleate | 0.489 | 0.366 |
| phosphatidylcholine | 1.273 | 0.933 |
| acetate | -0.033 | 1.235 |
| glucAc | 0.02 | 1.491 |
| Rv0950ko | 0.112 | 0.289 |
| Rv1096ko | 0.326 | 0.878 |
| Rv3684ko | 0.0 | 0.57 |
| delta_otsA_trehalose | -0.654 | 1.004 |