Top 10 genes with highest correlation to Rv0628c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3439c/- | (cc=0.4635) | info on Rv3439c/- |
| Rv1075c/- | (cc=0.4544) | info on Rv1075c/- |
| Rv2768c/PPE43 | (cc=0.4372) | info on Rv2768c/PPE43 |
| Rv0791c/- | (cc=0.4334) | info on Rv0791c/- |
| Rv3371/- | (cc=0.4293) | info on Rv3371/- |
| Rv2034/- | (cc=0.4255) | info on Rv2034/- |
| Rv2831/echA16 | (cc=0.4153) | info on Rv2831/echA16 |
| Rv2013/- | (cc=0.4142) | info on Rv2013/- |
| Rv2420c/- | (cc=0.4128) | info on Rv2420c/- |
| Rv2002/fabG3 | (cc=0.4088) | info on Rv2002/fabG3 |
Correlation of Rv0628c/- with Rv3439c/-
Normalized LFCs for Rv0628c/-:
(description and provenance of datasets)
| Rv0628c/- | Rv3439c/- | |
| Fe_supp_jason_reseq | -1.418 | -0.661 |
| low_pH_jason_reseq | -1.128 | -1.138 |
| NO_jason_reseq | 0.845 | -0.41 |
| B6_jason_reseq | -0.181 | 0.863 |
| MHCII_jason_reseq | -0.579 | 0.712 |
| Isoniazid02 | 0.503 | 0.49 |
| Rifampicin4 | 0.474 | 0.501 |
| Ethambutol3 | 0.045 | 0.216 |
| Meropenem3 | 0.483 | 0.944 |
| Vancomycin16 | 0.098 | 0.329 |
| Rv2680_day32 | 1.237 | -0.131 |
| H37Rv_KO_MarP | 0.319 | 0.008 |
| hypoxia_3wks | 0.159 | 0.064 |
| hypoxia_6wks | 0.01 | 0.416 |
| glycerol | -0.462 | 0.831 |
| cholesterol | 1.184 | -0.004 |
| AJ | 0.076 | 0.35 |
| Bibs02 | 0.38 | -0.852 |
| Bibs02c | -0.07 | 0.596 |
| BL6 | 0.07 | -0.167 |
| BL6a | -0.344 | -0.258 |
| BXD01 | -0.431 | -0.84 |
| BXD010 | -1.06 | -0.482 |
| BXD011 | -0.415 | -0.788 |
| BXD03 | -0.904 | -0.476 |
| BXD04 | -0.095 | -1.466 |
| BXD05 | 0.312 | -0.633 |
| BXD06 | -0.151 | -0.519 |
| BXD07 | 0.365 | -0.991 |
| BXD08 | 0.179 | -0.382 |
| BXD09 | -0.642 | -0.506 |
| CAST | 0.479 | -0.22 |
| CCcont | 0.113 | -0.209 |
| DS01 | 0.741 | 0.573 |
| DS02 | 0.849 | 0.443 |
| DS04 | 1.952 | -0.131 |
| DS0c | 0.105 | 0.234 |
| GP01 | -0.458 | 0.022 |
| GP02 | -1.061 | -0.036 |
| GP0c | -0.233 | -0.339 |
| NOD | -0.633 | -0.739 |
| NZO | -0.874 | 0.533 |
| PWK | 0.016 | 0.507 |
| H37Rv_KO_CtpC | -0.753 | -1.21 |
| H37Rv_KO_CtpD | -0.637 | 0.156 |
| H37Rv_KO_Rv1272 | -0.219 | -0.388 |
| H37Rv_KO_SugABC | -1.277 | -1.238 |
| H37Rv_KO_MbtN | -0.546 | -1.602 |
| Trans05 | -0.532 | -0.711 |
| macrophage_unactivated | 0.859 | -0.366 |
| IL1 | 1.092 | -0.184 |
| Rapamycin | 1.08 | 0.301 |
| Tcell | 0.388 | -0.831 |
| GMCSF | 1.354 | 0.584 |
| IFNab | 0.39 | -0.284 |
| IFNg | -0.214 | 0.04 |
| IFNg_GMCSF1 | -0.116 | -0.452 |
| Rv1432_day32 | 0.587 | 0.057 |
| Rv1565c_day32 | 1.205 | 0.464 |
| secA2_input | 1.223 | 0.299 |
| delta_Rv3594 | 0.828 | 1.716 |
| delta_Rv3717 | 0.54 | 1.287 |
| delta_Rv3811 | 2.085 | 1.184 |
| delta_Rv0954 | 1.246 | 2.106 |
| PonA1 | 1.503 | 1.384 |
| EccD1_KO | 0.089 | -0.141 |
| EspI_KO | 0.02 | -0.106 |
| PE35_KO | -1.485 | -0.403 |
| PPE68_KO | -0.531 | -0.765 |
| glycerol2 | 0.0 | 0.394 |
| lignocerate | 0.429 | 0.43 |
| oleate | -0.121 | -0.37 |
| phosphatidylcholine | 0.594 | 0.09 |
| acetate | -0.171 | -1.037 |
| glucAc | -0.243 | -0.233 |
| Rv0950ko | 0.069 | -0.112 |
| Rv1096ko | -0.069 | 0.365 |
| Rv3684ko | -0.671 | 0.039 |
| delta_otsA_trehalose | -0.925 | 0.507 |