TnSeqCorr

Top 10 genes with highest correlation to Rv0220/lipC:

update plotcorrelationlink to info on gene
Rv0822c/- (cc=0.6166) info on Rv0822c/-
Rv3675/- (cc=0.5392) info on Rv3675/-
Rv0222/echA1 (cc=0.534) info on Rv0222/echA1
Rv3840/- (cc=0.532) info on Rv3840/-
Rv1517/- (cc=0.5306) info on Rv1517/-
Rv2443/dctA (cc=0.5285) info on Rv2443/dctA
Rv2584c/apt (cc=0.5261) info on Rv2584c/apt
Rv1720c/vapC12 (cc=0.522) info on Rv1720c/vapC12
Rv2430c/PPE41 (cc=0.5191) info on Rv2430c/PPE41
Rv3847/- (cc=0.5191) info on Rv3847/-

Correlation of Rv0220/lipC with Rv0822c/-

Normalized LFCs for Rv0220/lipC:
(description and provenance of datasets)
Rv0220/lipCRv0822c/-
Fe_supp_jason_reseq

-0.172

-0.336

low_pH_jason_reseq

-0.564

-0.756

NO_jason_reseq

-0.551

-0.27

B6_jason_reseq

-0.6

-1.076

MHCII_jason_reseq

-0.075

-0.457

Isoniazid02

0.143

0.109

Rifampicin4

-0.596

-0.19

Ethambutol3

0.452

0.764

Meropenem3

0.041

0.317

Vancomycin16

-0.329

0.334

Rv2680_day32

-0.125

-0.501

H37Rv_KO_MarP

0.301

-0.617

hypoxia_3wks

0.195

0.159

hypoxia_6wks

-0.106

0.157

glycerol

0.65

-0.161

cholesterol

0.142

0.331

AJ

0.155

0.353

Bibs02

1.02

0.144

Bibs02c

-0.815

0.502

BL6

0.304

0.743

BL6a

-0.069

1.042

BXD01

0.022

0.715

BXD010

0.506

1.18

BXD011

0.472

0.663

BXD03

1.002

1.16

BXD04

0.896

0.707

BXD05

1.107

0.905

BXD06

0.131

1.181

BXD07

0.579

1.02

BXD08

0.445

0.768

BXD09

0.435

1.011

CAST

0.592

0.536

CCcont

-0.279

0.625

DS01

0.51

0.549

DS02

0.247

0.181

DS04

0.419

0.869

DS0c

0.179

0.528

GP01

1.623

1.013

GP02

1.416

0.996

GP0c

0.602

0.214

NOD

0.454

0.83

NZO

-0.254

0.763

PWK

0.311

1.06

H37Rv_KO_CtpC

-0.086

0.627

H37Rv_KO_CtpD

0.939

1.105

H37Rv_KO_Rv1272

0.683

0.322

H37Rv_KO_SugABC

0.814

0.431

H37Rv_KO_MbtN

-0.376

0.005

Trans05

-0.576

0.975

macrophage_unactivated

0.922

0.59

IL1

0.142

0.139

Rapamycin

-0.203

0.261

Tcell

-0.052

0.678

GMCSF

0.842

0.961

IFNab

0.638

0.532

IFNg

0.331

0.326

IFNg_GMCSF1

0.663

0.16

Rv1432_day32

0.0

0.681

Rv1565c_day32

-0.823

-1.72

secA2_input

-0.817

-0.517

delta_Rv3594

-0.242

-0.116

delta_Rv3717

-0.307

-0.316

delta_Rv3811

-0.299

-0.29

delta_Rv0954

0.227

-0.649

PonA1

0.084

-0.352

EccD1_KO

-0.628

-0.5

EspI_KO

-0.642

-0.117

PE35_KO

-0.362

-0.23

PPE68_KO

-0.889

-0.784

glycerol2

0.021

-0.175

lignocerate

-0.357

-0.524

oleate

0.142

0.007

phosphatidylcholine

-0.172

-0.62

acetate

-0.427

-1.034

glucAc

-0.523

-0.789

Rv0950ko

-0.314

-0.335

Rv1096ko

0.235

0.44

Rv3684ko

-0.94

0.013

delta_otsA_trehalose

0.317

0.707